Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPTFNGSVFMPSAFILIGIPGLESVQCWIGIPFSAMYLIGVIGNSLILVIIKYENSLHIPMYIFLAMLAATDIALNTCILPKMLGIFWFHLPEISFDACLFQMWLIHSFQAI--ESGI--LLAMALDRYVAICIPLRHATIFSQQFLTH-IGLGVTLRAAILIIPSLGLIKCCLKHYRTTVISHSYCEHMAIVKLATEDIRVNKIYGLFVAFAILGFDIIFITLSYVQIFITV-FQLPQKEAR----FKAFNTCIAHI--------------CVFLQFYLLAFFSFFTHRFGSHIP---PYIHILLSNLYLLVPPFLNPIVYGVKTKQIRDHIVKVFFFKKVT |
| 3VGA Chain:A ((15-302)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI------STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ----------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236647 for 1786 contacts (-132.5/contact) +
2D Compatibility (PS) -25492 + (NN) -977 + (LL) 3196
1D Compatibility (HY) -25200 + (ID) 3700
Total energy: -288820.0 ( -161.71 by residue)
QMean score : 0.269
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