Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDSNLSDNHLPD------TFFLTGIPGLEAA-HFWIAIPFCAMYLVALV---GNAALILVIAMDNALHAPMYLFLCLLSLTDLALSSTTVP----KMLAILWLHAGEISFGGCLAQMFCVHSIYALESSI--LLAMAFDRYVAICNPLRYTTIL--NHAVIGRIGFVGLFRSVAIVSPFIFLLRRLPYCGHRVMTHTYCEHMGIARLACANITVNIVYGLTVALLAMGLDSILIAISYGFILH-AVFHLPSHDA----QHKALSTCGSHIGIILVFYIPAFFSFLTHRFGHHEVPKHVHIFLANLYVLVPPVLNPILYGARTKEIRSRLLKLLHLGKTSI |
| 4LDL Chain:A ((154-463)) | --------NQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTW------TFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARV----IILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILL-NWIGYVNSGFNPLIY-CRSPDFRIAFQELLCL----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -277325 for 1968 contacts (-140.9/contact) +
2D Compatibility (PS) -29152 + (NN) -10518 + (LL) 1220
1D Compatibility (HY) -23600 + (ID) 3850
Total energy: -343225.0 ( -174.40 by residue)
QMean score : 0.288
|
|
|