Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTHRNDTLSTEASDFLLNCFVRSPSWQHWLSLPLSLLFLLAVGANTTLLMTIWLEASLHQPLYYLLSLLSLLDIVLCLTVIP----KVLTIFWFDLRPISFPACFLQMYIMNCFLAMESC--TFMVMAYDRYVAICHPLRYPSIITDHFVVKAAMFILTRNVLMTLP--IPILSAQLRYCGRNVIENCICANMSVSRLSCDDVTINHLYQFAGGWTLLGSDLILIFLSYTFILRAVLR-LKAEGAVA----KALSTCGSHFMLILFFSTILLVFV---LTHVAKKK-VSPDVPVLLNVLHHVIPAALNPIIYGVRTQEIKQGMQRLLKKGC |
| 4LDL Chain:A ((164-461)) | ITTFRTGTWDAYAAD---------EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTW------TFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN---KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI-NCYAEE------TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLG---IIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYV-NSGFNPLIY-CRSPDFRIAFQELLCL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253499 for 1941 contacts (-130.6/contact) +
2D Compatibility (PS) -28063 + (NN) -7247 + (LL) 2876
1D Compatibility (HY) -31200 + (ID) 4100
Total energy: -321233.0 ( -165.50 by residue)
QMean score : 0.252
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