Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGDNQSENSQFLLLGISESPEQQRILFWMFLSMYLVTVLGNVLIILAISSDSHLHTPMYFFLANLSFTDLFFVTNTIPKMLVNFQSQNKAISYAGCLTQLYFLVSLVTLDNLILAVMAYDRYVATCCPLHYVTAMSPGLCVLLLSLCWGLSVLYGLLLTFLL-------TRVTFCGPREIHYLFCDMYILLWLACSNTHIIHTALIATGCFIFLTPLGFMTTSYVRIV----RTILQMPS----ASKKYKTFSTCASHLGVVSLFYGTLAMVYLQPLH-----TYSMKDSVAT---VMYAVL-----TPMMNPFIYRLRNKDMHGAPGRVLWRPFQRPK |
| 3VG9 Chain:A ((14-294)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG--LTPMLGWNNCGQ--SQGCGEGQVACLFEDVVPM-------NYMVYFNFFAC----VLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWL-PLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236027 for 1782 contacts (-132.5/contact) +
2D Compatibility (PS) -24212 + (NN) 674 + (LL) 3812
1D Compatibility (HY) -25200 + (ID) 3550
Total energy: -284503.0 ( -159.65 by residue)
QMean score : 0.299
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