Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEGKNQTNISEFLLLGFSSWQQQQVLLFALFLCLYLTGLFGNLLILLAIGSDHCLHTPMYFFLANLSLVDLCLPSATVPKMLLNIQTQTQ-TISYPGCLAQMYFCMMFANMDNFLLTVMAYDRYVAICHPLHYSTIMALR-LCASLVAAPWVIAILNPLLHTLMMAHLHFCSDNVIHHFFCDINSLLPLSCSDT-------SLNQLSVLATVGLIFVVPSVCILVSYILIVSAVM-------------KVPSAQGKLKAFSTCGSHLALVILFYGAITGVYMSPLSNHSTEKDSAASVIFMVVAPVLNPFIYSLRNNELKGTLKKTLSRPGAVAHACNPSTLGGRGGWIMRS----------GDRDHPG |
| 4XNV Chain:A ((38-382)) | -SFKCALTKTGF----------QFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADF-LYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAISPILFY---------SGTGVRKN-------KTITCYDTTSDEYLRSYFIYSMCTTVAM-FCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168582 for 2130 contacts (-79.1/contact) +
2D Compatibility (PS) -31708 + (NN) -7400 + (LL) 2868
1D Compatibility (HY) -24000 + (ID) 3050
Total energy: -231872.0 ( -108.86 by residue)
QMean score : 0.156
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