Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MGFYHVGQAAFELLTSSFILVGFS-DRPHLELIVFVVVLIFYLLTLLGNMTIVLLSALDSRLHTPMYFFLANLSFLDMCFTTGSIPQMLYNLWGPDKTISYVGCAIQLYFVLALGGVECVLLAVMAYDRYAAVCKPLHYTIIMHPRLCGQLASVAWLSGFGNSLIMAPQTLMLPRCGHRRVDHFLCEMPALIGMACV-------DTMMLEALAFALAIFIILAPLILILISYGYVGGTVLRIKSA----AGRKKAFNTCSSHLIVVSLFYGTIIYMYLQPANTYSQDQGK-------FLTLFYTIVTPSVNPLIYTLRNKDVKEAMKKVLGKGSAEI-------------------- |
| 1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF---------RFGENHAIMGVAFTWVMALACAAPPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273328 for 2411 contacts (-113.4/contact) +
2D Compatibility (PS) -31064 + (NN) -3806 + (LL) 1116
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -310232.0 ( -128.67 by residue)
QMean score : 0.231
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