Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKSNSSVVSEFVLLGLCSSQKLQLFYFCFFSVLYTVIVLGNLLIILTVTSDTSLHSPMYFLLGNLSFVDICQASFATPKMIADFLSAHETISFSGCIAQIFFIHLFTGGEMVLLVSMAYDRYVAICKPLYYVVIMSRRTCTVLVMISWAVSLVHTLSQLSFTVNLPFCGPNVVDSFFCDLPRVTKLACL--DSYIIEILIVVNSGILSLSTFSLLVSSYIIILVTV--WLKSSAAMAKAFSTL------ASHIAVVILFFGPC--------IFIYVWP-FTISPLD-KFLAIFYTVFTPVLNPIIYTLRNRDMKAAVRKIV-NHYLRPRRISEMSLVVRTSFH |
2YDV Chain:A ((21-312)) | --------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN---CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ----STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210825 for 1929 contacts (-109.3/contact) +
2D Compatibility (PS) -26789 + (NN) -7047 + (LL) 4092
1D Compatibility (HY) -25600 + (ID) 3600
Total energy: -269769.0 ( -139.85 by residue)
QMean score : 0.230
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