Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGAKNNVTEFVLFGLFESREMQHTCFVVFFLFHVLTVLGNLLVIITINARKTLKSPMYFFLSQLSFADICYPSTTIPKMIADTFVEHKIISFNGCMTQLFSAH--FFGGTEIFLLTAMAYDRYVAICRPLHYTAIMDCRKCGLLAGASWLAGFLHSILQTLLTVQLPFCGPNEIDNFFCDVHPLLKLACADTYMVGLIVVANSGMISLASFFILIISYVIILLNLRSQSSEDRR-----------------KAVSTCGSHVITVLLVLMPPMFMYIRP--STTLAADKLIILFNIV--MPPLLNPLIYTLRNNDVKNAMRKLFRVKRSLGEK |
2YCZ Chain:A ((9-299)) | -------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAI----SALVSFLPIMMHWWRDEDPQALKCYQDP----GCCDFVTNRAYAIAS----SIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212641 for 1943 contacts (-109.4/contact) +
2D Compatibility (PS) -26778 + (NN) -2827 + (LL) 3116
1D Compatibility (HY) -29600 + (ID) 3250
Total energy: -271980.0 ( -139.98 by residue)
QMean score : 0.219
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