Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEARNQTAISKFLLLGLIEDPELQPVLFSLFLSMYLVTILGNLLILLAVISDSHLHTPMYFFLSNLSFLDICLSTTTIPKMLVNIQAQNRSITYSGCLTQICFVLFFAGLENCLLAAMAYDRYVAICHPLRYT-VIMNPRLCGLLILLSLLTSVVNALLLSLMVLRLSFCTDLEIPLFFCELAQVIQLTC--SDTLINNILIYFA--ACIFGGVPLSGIILSYTQITSCVLR---------MPSASGK---HKAVSTCGSHLSIVLLFYGAGLGVYISSVVT-------DSPRKTAVASVMYSVFPQMVNPFIYSLRNKDMKGTLRKFIGRIPSLLWCAICFGFRFLE |
| 3VGA Chain:A ((8-303)) | -------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-FAITISTGFCAACH-GCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG---LTPM-LGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVL--VPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -288577 for 2000 contacts (-144.3/contact) +
2D Compatibility (PS) -25987 + (NN) 2908 + (LL) 4104
1D Compatibility (HY) -25600 + (ID) 4100
Total energy: -337252.0 ( -168.63 by residue)
QMean score : 0.294
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