Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGRRNNTNVPDFILTGLSDSEEV-------------QMALFILFLLIYLITMLGNVGMILIIRLDLQ---LHTPMYFFLTHLSFIDLSYSTVITPKTLANLLTSNY-ISFMGCFAQMFFFVFLGAAECFLLSSMAYDRYVAICSPLRYPVIMSKRLCCALVTGPYVISFINSFVNVVWMSRLHFCDSNVV---RHFFCDTSPILALSCM-------DTYDIEIMIHILAGSTLMVSLITISASYVSILSTILKINSTSGKQKALSTCASHLLGVTIFYGTMIFTYLKPRKSYSLGRDQ-------VASVFYTIVIPMLNPLIYSLRNKEVKNALIRVMQRRQDSR-------------- |
| 1F88 Chain:A ((1-348)) | ---MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS--------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG----MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280717 for 2295 contacts (-122.3/contact) +
2D Compatibility (PS) -29572 + (NN) -6758 + (LL) 1716
1D Compatibility (HY) -20000 + (ID) 3000
Total energy: -338331.0 ( -147.42 by residue)
QMean score : 0.330
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