Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAPENFTRVTEFILTGVSSCPELQIPLFLVFLVLYGLTMAGNLGIITLTSVDSRLQTPMYFFLQHLALINLGNSTVIAPKMLINFLVKKKTTSF--YECATQLGGFLFFIVSEVIMLALMAYDRYVAICNPLLYMVVVSRRLCLLLVSLTYLYGFSTAIVVSSYVFSVSYCSS--NIINHFYCDNVPLLALSCSDTYLPETVVFISAATNVVGS---------LIIVLVS---YFNIVLSILKICSSEGRK--------KAFSTCASHMMAVTIFYGTLLFMYVQPRSNHSLDTDDKMASVFYTL--VIPMLNPLIYSLRNKDVKTALQRFMTNLCYSFKTM |
| 2YCW Chain:A ((11-298)) | ---------------------EAGMSLLMALVVL--LIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTR---------------ARAKVIICTVWAISALVSFLPIMMHWWRDEDP-QALKCYQD--PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201279 for 1852 contacts (-108.7/contact) +
2D Compatibility (PS) -26356 + (NN) -6427 + (LL) 4084
1D Compatibility (HY) -21600 + (ID) 3700
Total energy: -255278.0 ( -137.84 by residue)
QMean score : 0.266
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