Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKNNLTRVTEFILMGFMDHPKLEIPLFLVFLSFYLVTLLGNVGMIMLIQVDVKLYTPMYFFLSHLSLLDACYTSVITPQILATLATGKTVISYGHCAA-QFFLFTIC-----AGTECFLLAVMAYDRYAAIRNPLLYT-VAMNPR------LCWSLVVGAYVCGVSGAILRTTCTFTLS--FCKDNQINFFFCDLPPLLKLACSDTANIEIVIIFFGNFVI--LANASVILISYLLIIKTILKVKSS---GGRAKTFSTCASHIT-AVALFFG--ALIFMYLQ-----SGSGKSLEEDKVVSVFYTVVI----PMLNPLIYSLRNKDVKDAFRKVARRLQVSLSM |
| 3VGA Chain:A ((12-304)) | -----------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--------ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVL---SFAIGLTPMLGWNNCGQ---SQGCGEGQVACLFEDVVPM---------NYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192696 for 1754 contacts (-109.9/contact) +
2D Compatibility (PS) -25539 + (NN) -6713 + (LL) 4808
1D Compatibility (HY) -25200 + (ID) 3500
Total energy: -248840.0 ( -141.87 by residue)
QMean score : 0.284
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