Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAANVSGAKSCPANFLAAADDKLSGFQGDFLWPILVVEFLVAVASNGLALYRFSIRKQRPWHPAVVFSVQLAVSDLLCALTLPPLAAYLYPPKHWRYGEAACRLERFLFTCNLLGSVIFITCISLNRYLGIVHPFFARSHLRPKHAWAVSAAGWVLAALLAMPTLSFSHLKRPQQGAGNCSVARPEACIKCLG-TADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVL-------------------------RSPGMTVAE--------------------KLRVAALVASGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMPLAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRELSQ |
| 4XNV Chain:A ((38-382)) | -------SFKCALTK--------TGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHM-KPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPK-SLGRLKKKNAICISVLVWLIVVVAISPILFYSG-----------TGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQT---------PAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLA----------------------------------------GDTFRRR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199522 for 2215 contacts (-90.1/contact) +
2D Compatibility (PS) -30894 + (NN) -17078 + (LL) 3236
1D Compatibility (HY) -33200 + (ID) 5000
Total energy: -282458.0 ( -127.52 by residue)
QMean score : 0.305
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