Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMCFLLIISSILVVFAFVLGNVANGFIALVNVIDWVNTRKISSAEQILTALVVSRIGLLWVMLFLWYATVFNSALYGLEVRIVASNAWAVTNHFSMWLAASLSIFCLLKIANFSNLISLHLKKRIKSVVLVILLGPLVFLICNLAVITMDERVWTKEYEGNVTWKI-KLRN---AIHLSSLTVTTLANLIPFTLSLICFLLLICSLCKHLKKMRLHSKGSQDPSTKVHIKALQTVT----SFLMLFAIYFLCIITSTWNLRT---------QQSKLVLLLCQTVAIMYPSFHSFILIMGSRKLKQTFLSVLWQMTR |
| 2LNL Chain:A ((39-323)) | -----KYVVIIAYALVFLLSLLGNSLVMLVILYSR---VGRSVTDVYLLNLALADLLFALTL-PIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV---HATRTL-T-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAY-HPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMG--------------QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189004 for 1908 contacts (-99.1/contact) +
2D Compatibility (PS) -26221 + (NN) -429 + (LL) 1844
1D Compatibility (HY) -16800 + (ID) 2050
Total energy: -232660.0 ( -121.94 by residue)
QMean score : 0.230
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