Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATVNTDATDKDISKFKVTFTLVVSGIECITGILGSGFITAIYGAEWARGKTLPTGDRIMLMLSFSRLLLQIWMMLENIFSLLFRIVYNQNSVYILFKVITVFLNHSNLWFAAWLKVFYCLRIANFNHPLFFLMKRKIIVLMPWLLRLSVLVSLSFSFPLSRDVFNVYVNSSIPIPSSNSTEKKYFSETNMVN--L-VFFYNMGIFVPLIMFILAATLLILSLKRHTLHMGSNATG------------------------------------------------------------------------------------------------------------------------------------------------------SRDPSMKAHIGAIKATSYFLILYIFNAIALFLS-TSNI-F------------DTYSSWNILCKIIMAAYPAGHSVQLILGNPGLRRAWKRFQHQVPLYLKGQTL |
| 3ODU Chain:A ((42-499)) | -----------ENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQK---KLRSMTDKYRLHLSVADLLFVITL-PFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV---HATNSQ-RPRKLLAEKVVYVGVWIPALLLTIPDFIFAN-V-----SEAD-DRYICDRF-YPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200840 for 2064 contacts (-97.3/contact) +
2D Compatibility (PS) -29672 + (NN) -10681 + (LL) 1268
1D Compatibility (HY) -14400 + (ID) 2000
Total energy: -256325.0 ( -124.19 by residue)
QMean score : 0.213
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