Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSAIEAIYIILIAGELTIGIWGNGFIVLVNCIDWLKRRDISLIDIILISLAISRICLLCVISLDGFFMLLFPGTYGNSVLVSIVNVVWTFANNSSLWFTSCLSIFYLLKIANISHPFFFWLKLKINKVMLAILLGSFLISLIISVPKNDDMWYHLFKVSHEENITWKFKVSKI----PGTFKQLTLNLGVMVPFILCLISFFLLLFSLVRHTKQIRLHATGFRDPSTEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALI-P------------QGKLVLMIGDIVTVIFPSSHSFILIMGNSKLREAFLKMLRFVKCFLRRRKPFVP |
| 2LNL Chain:A ((38-322)) | ----NKYVVIIAYALVFLLSLLGNSLVMLVILY---SRVGRSVTDVYLLNLALADLLFALT-LPIWAASK-VNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAI---VHAT-RTLT-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQ-A--YHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAH--------------MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -213684 for 1955 contacts (-109.3/contact) +
2D Compatibility (PS) -26879 + (NN) -5186 + (LL) 3492
1D Compatibility (HY) -26000 + (ID) 2300
Total energy: -270557.0 ( -138.39 by residue)
QMean score : 0.272
|
|
|