Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-IPVCNIDTNDLAKCRPAVTGNNPPPPGPDCCAVARVANLQCLCPYK--PYLPTVGIDPSRVRPLLANCGVNSP-SCF
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35126 for 486 contacts (-72.3/contact) +
2D Compatibility (PS) -7879 + (NN) -7255 + (LL) 132
1D Compatibility (HY) -7200 + (ID) 1350
Total energy: -58678.0 ( -120.74 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: