Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASKLVTCAGYLNTTDT-PPESCCDPLKEAATT-------QAACMCAILMNKAALQAF-GVAPEQGVLLAKRCGVTNDASTCAK
1AFH Chain:A ((3-80))
-----------------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA--AAGVSGLNAGNAASIPSKCGVSIP------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36777 for 501 contacts (-73.4/contact) +
2D Compatibility (PS) -7305 + (NN) -3623 + (LL) 1280
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -50875.0 ( -101.55 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: