Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VYRPWPSECVEVANVMVEQCKMFFVHQESPPTAECCRWFSSRRKYAK---ERRRLCRCLEFLTTAFKNLKPD-VLALSDQCHFSSGFPMSRDHTCA
1AFH Chain:A ((3-90))
-------SCGQVASA-IAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCS
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54435 for 665 contacts (-81.9/contact) +
2D Compatibility (PS) -8691 + (NN) -3850 + (LL) 440
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -70436.0 ( -105.92 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: