Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-ATICNIDTSKLAECLPAVSGRSPPPPTKACCTALLSADLHCLCNYK--SALPAFGINPALAMALPKKCGGSLPPNCKVDAEP
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38815 for 507 contacts (-76.6/contact) +
2D Compatibility (PS) -8211 + (NN) -9937 + (LL) 288
1D Compatibility (HY) -6800 + (ID) 1800
Total energy: -65275.0 ( -128.75 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: