Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GGVVEICNVSKDDLMPCKPAVTQPP-AQPVQACCSVLSTANLTCFCEFGNNYPSLLRMFGIDPDLAKALPGECKLNSPPGC
2RKN Chain:A ((2-77))
---IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSP--WLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44426 for 509 contacts (-87.3/contact) +
2D Compatibility (PS) -7822 + (NN) -5671 + (LL) -320
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -67439.0 ( -132.49 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: