Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ADDDAVLLCNMTRGGLEACKPSVRSGSSDPAADPSKECCAALAGADLPCLCSYRHSFLLPSLGIDPDLALQLPAKCNLTATPGC
2RKN Chain:A ((2-77))
-----IDLCGMSQDELNECKPAVSKENPT---SPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37537 for 526 contacts (-71.4/contact) +
2D Compatibility (PS) -8171 + (NN) -5068 + (LL) 208
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -60668.0 ( -115.34 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: