Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQL---NNLSVCAPFVV------PGAPDS-T------PSADCCTALQTIDDACMCSTLRIA----------------------SRLPSHCNLTP-VTCDVNA
1SM7 Chain:A ((1-108))
QPQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFIA
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54636 for 451 contacts (-121.1/contact) +
2D Compatibility (PS) -6919 + (NN) -1394 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -69249.0 ( -153.55 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: