Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------QSADCAATAE---LLSPCASAV----GNNPQDP--------TPECCAVLQTADVDCICALVESTIK-----------------LPSECGLDTPQCPSD
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39933 for 405 contacts (-98.6/contact) +
2D Compatibility (PS) -6754 + (NN) -4721 + (LL) -76
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -57984.0 ( -143.17 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: