Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EPNTSPSSAPSPSAGCSTIIY--DMVDCVSFLSVGSK--------DKKP-----------SPSCCSGFETVLNTDPKCICEALKSSA-E----LG-----IDVDLKRAATLPSACGVSAPPISNCNGENIAD
1PSY Chain:A ((13-116))
----------SSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30923 for 499 contacts (-62.0/contact) +
2D Compatibility (PS) -7571 + (NN) -2769 + (LL) -104
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -44917.0 ( -90.01 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: