Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLLSLSDCLTYVEAGSNLTKPEKPCCPELAGLVESTP-------QCLCYLLDKNATSSYGFNIDMNRALNLPTVCKVSTP----PVSLCSG
1T12 Chain:A ((3-88))
--------------TCGQVTSNLAPCLAYLRNTG----PLGRCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAIS-GINLGKAAGLPSTCGVNIPYKISPSTDCS-
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27339 for 519 contacts (-52.7/contact) +
2D Compatibility (PS) -7940 + (NN) -5196 + (LL) 576
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -46349.0 ( -89.30 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: