Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------DVNQDKTECANQLVG--LASCLPYVGGQSKTP---------------------TIDCCSGLKQVLDKSRKCLCVLIKD-----RDDPSLG---LKINATLAATLPSTCH-APVNMTECI
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46264 for 566 contacts (-81.7/contact) +
2D Compatibility (PS) -8311 + (NN) 317 + (LL) 164
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -56744.0 ( -100.25 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: