Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSDVCTVVSPVLESCYIALQSGESFMKSESVCCKSLEILENRIRDSDHQFTRYAVCECFKASDNDKQV-LVN-ENLLEVQVLCGPHVPYPITSYSDCLQYADEEIARTAL
1AFH Chain:A ((4-89))
----CGQVASAIAPCISYARGQGS--GPSAGCCSGVRSLNNAARTT---ADRRAACNCLKNAAA--GVSGLNAGNAASIPSKCGVSIPYTISTSTDC-------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62701 for 670 contacts (-93.6/contact) +
2D Compatibility (PS) -8638 + (NN) -2850 + (LL) 1960
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -75029.0 ( -111.98 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: