Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KKDLPFCNVELLPCVLPFKVRGHGSKLPNGCCEKMKK-----------STSCMCRFLMAKER-DLNA-AAHRIFWFCKISVPNCPKI
1SIY Chain:A ((9-78))
---------NLAQCI-GFLQKG--GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIP-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26266 for 364 contacts (-72.2/contact) +
2D Compatibility (PS) -5837 + (NN) -3503 + (LL) 540
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -38216.0 ( -104.99 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: