Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNYYEILEY---VAPEEINKAYKRLGLKCHPDKLLP--KKRKISRIVKKAINGAALSKLELEEMQSL
2CTP Chain:A ((6-64))
-SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAI-GTAYA--VLSNPEKRKQYDQ
General information:
TITO was launched using:
RESULT:
Template:
2CTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18238 for 325 contacts (-56.1/contact) +
2D Compatibility (PS) -5564 + (NN) -2603 + (LL) 372
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -30733.0 ( -94.56 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_2CTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CTP-query.scw
PDB file :
Tito_Scwrl_2CTP.pdb
: