Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MTMTDISLLRRKLIYRSWHRGCKETDILLGYFALNYLDKFSLNELIEYEKIVDLDDYELYCYITCKTN---LPSNL-SSDIVNLITHFIKANPLCTQ
2LM4 Chain:A ((1-109))
MGHHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWANSKLLKQLQEFSENKEKEI-
General information:
TITO was launched using:
RESULT:
Template:
2LM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64930 for 596 contacts (-108.9/contact) +
2D Compatibility (PS) -9805 + (NN) -4513 + (LL) 120
1D Compatibility (HY) -4400 + (ID) 1450
Total energy: -84978.0 ( -142.58 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_2LM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LM4-query.scw
PDB file :
Tito_Scwrl_2LM4.pdb
: