Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKGKELSSDVYEANIVLNDKTMATLPKIGYHMLNDQLVMHNHVTEEKVVISRDFHFLKAVKF------SDDYKLTFYNALGNEFFEYKKYDLQYSNISDKNKFIGLNCAKKIQFESRRVI
2E50 Chain:A ((74-137))
---------------------LIAKIPNFWVTTFVNHPQVSALLGEEDEEA---MHYLTRVEVTEFEDIKSGYRIDFY-FDENPYFENKVLSKEFHSSKSTEIKWKSGKDMFFTWFTADEL
General information:
TITO was launched using:
RESULT:
Template:
2E50.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26585 for 295 contacts (-90.1/contact) +
2D Compatibility (PS) -5987 + (NN) -262 + (LL) 1280
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -36254.0 ( -122.89 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_2E50.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E50-query.scw
PDB file :
Tito_Scwrl_2E50.pdb
: