Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEKDSNFAMEKPGNNYVGCISSENGECKNFYDLKLNFVKYN-SGNNSSLYPYYYNLENFGNFLEVDVKLRELIGLKKGLKD-----------
3M9Q Chain:A ((4-92))
LRDETPLF----HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQRELAEAAKL
General information:
TITO was launched using:
RESULT:
Template:
3M9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20790 for 446 contacts (-46.6/contact) +
2D Compatibility (PS) -8231 + (NN) -800 + (LL) 520
1D Compatibility (HY) -4000 + (ID) 500
Total energy: -33801.0 ( -75.79 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_3M9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9Q-query.scw
PDB file :
Tito_Scwrl_3M9Q.pdb
: