Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNRIVIGISGASGSIYGMHILKALK-GADCETHLVISRAGKTTIAHEITERLEDITSLADFYYSEEKIGEKIASGSFKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVTLKERRKLVLIVRESPLHLGHLQNMLKLTEMGAIIAPPMPAFYTKPKSLEDIISHSISKVLSLFDIKLPDFKEWQGV
1SBZ Chain:A ((2-186))
---KLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHP---RWQGL
General information:
TITO was launched using:
RESULT:
Template:
1SBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145060 for 1488 contacts (-97.5/contact) +
2D Compatibility (PS) -19801 + (NN) -10280 + (LL) 168
1D Compatibility (HY) -17600 + (ID) 4300
Total energy: -196873.0 ( -132.31 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1SBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBZ-query.scw
PDB file :
Tito_Scwrl_1SBZ.pdb
: