Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLSPAIFSIGPVSIHWYSL-AYVLGIVFAYWHLHKLDEQKIFTKNFYDSLLTATIIGII-----------LGGRLGFVLIYDPISYINNPIEILKTWKGGMSFHG----GAIGVLCAVIISCRRYNIPI-------FYTLDLISC----------GVPIGLF-LGRIGNFVNGELFGRV--TTMPWGMVFPESGDNLLRHPSQLYEAFFEGLLFFAIANSLFFLTR--IRLYHGTLTGIAVIWYGTVRFVVE--FFREPDYQVG---YLWLDLTMGQLLSIFMT-------LLGIIVYLSALNSKFNTKSVA------------------- |
4NTC Chain:A ((2-326)) | MSIG-KLLSNGALLVDVLIIGAGPAGLSTATGLARQLHTAVVFDSGVYRNAKTQHMHNVLGWDHRNPAELRAAGRADLTTRYSTIQFQNSTIEAIRQVETNQLFEARDNEGHSWYGRKVVLATGVRDIPLDIEGYSECWANGIYHCLFCDGYEERGQETVGVLALGPIANPARALHLARMALRLSESVTIYTNGNEQLAKEIQQAAEESPVG------ASGLKFEARPIRRFEKGDVAKTVIVHLGESESKTEGFLVYNPQTEVNGPFAKQLALNMTEGGDILTTPPFYETSVPGVFAVGDCATPLKAVTPAVSMGSLAAGGLVAQLQAQAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226212 for 1891 contacts (-119.6/contact) +
2D Compatibility (PS) -27425 + (NN) -1406 + (LL) 824
1D Compatibility (HY) -2000 + (ID) 2500
Total energy: -258719.0 ( -136.82 by residue)
QMean score : 0.155
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