Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK-AQNLSSIHEGDSIACSGVCLTVVDIIND-----IFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCPQELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
4E0F Chain:B ((1-201))
MFTGIITDIGKV-DRVKPLNEGVLLRIETAYDPETIELGASIACSGVCLTVVALPEKGSNARWFEVEAWEEALRLTTISSWQSGRKINLERSLKLGDEMGGHLVFGHVDGQAEIVERKDEGDAVRFTLRAPEELAPFIAQKGSVALDGTSLTVNGVNANEFDVLLIRHSLEVTTWGERKAGDKVNIEIDQLARYAARLAQYQKL
General information:
TITO was launched using:
RESULT:
Template:
4E0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98435 for 1509 contacts (-65.2/contact) +
2D Compatibility (PS) -21219 + (NN) -2272 + (LL) 204
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -141872.0 ( -94.02 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4E0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E0F-query.scw
PDB file :
Tito_Scwrl_4E0F.pdb
: