Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMVKGILCDWLGVTELQESQKIDAEQFQRIFSALKKWQEAQKVNTEQFEKVFSALEE-KIGTEQFQSMQEYLNGLQKKFTGLEEKAGTLIETVGEQEKIMLTCCIIASVITLAAISFITFCIYQGVKSGRERQRSLSDISAQNLMNQTHQAQNFM
4TKO Chain:B ((120-236))
---IKLVKLDWERYKSLFQKGLIPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGIENARNEFKTIEELKKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGDVVRAGQPAFALVNPESFYVEVLLEETKLKGVKV
General information:
TITO was launched using:
RESULT:
Template:
4TKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2415 for 499 contacts (-4.8/contact) +
2D Compatibility (PS) -12536 + (NN) -3524 + (LL) 480
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -25195.0 ( -50.49 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_4TKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TKO-query.scw
PDB file :
Tito_Scwrl_4TKO.pdb
: