Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSKKSEGRIYFAIEVDIFRYIATYYMLCEQKGSQTEEGVVHNDKYKEQRKKLYGKDEEQKGNRK
1NYB Chain:A ((1-22))
------------------------------------ESKGTAKSRYKARRAELIAERR-------
General information:
TITO was launched using:
RESULT:
Template:
1NYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6296 for 81 contacts (77.7/contact) +
2D Compatibility (PS) -2260 + (NN) -624 + (LL) 3364
1D Compatibility (HY) -400 + (ID) 250
Total energy: 6126.0 ( 75.63 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1NYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYB-query.scw
PDB file :
Tito_Scwrl_1NYB.pdb
: