Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIDFNIINNMININTKRQITGFFVYIIGFSGSGKLSTAIELSNMIDA-----LIVNSNFSNNTQVCSIYDNVFEHNHIPEEVQDRIYNIAQIMLQAIEA-YLIHSKNYIFIDELMKNNDHNTKMYNSVVELSKRMNTQILPIVLRCDLLTLQKRIKLKRQRENKKATNISSIIENFRTHDSFIP--PNAIEIENSNMSIKEVAEKITSQMHKLSQINSIYTKG
2YVU Chain:A ((10-184))
------------------IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS-----EGAGFTR-----EERLRHLKRI-A-WIARLLARNGVIVICSFVSP--YKQARNMVRR---IVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKA-LKGEL---ENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKAVIE--------
General information:
TITO was launched using:
RESULT:
Template:
2YVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93598 for 1263 contacts (-74.1/contact) +
2D Compatibility (PS) -18296 + (NN) -7511 + (LL) 3488
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -122267.0 ( -96.81 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2YVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVU-query.scw
PDB file :
Tito_Scwrl_2YVU.pdb
: