Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAAHCYIKKLKLSNFRNHLNFELDSDDSSVVIIGKNGIGKTNILEAISLLAKSNGMKKAKASEMQNRFSNKDWAVHYDFFNGADLNSIGIAKSFNKKLIQIGGKMQSSYSSLYRISNVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYACYYMRYRKAKRERGRL-LRENILNKSWLSSLENIMAVNAVNILDMRLSVLKMLQDTINSYSTQFFP--KVSLKFNSQLTLSDTAKYFQNRLRENREKDSLTGRITFCVNNDKFQVFCQRRDLPINLCSTGEQKLLLLSIILSSVKARCIHYNKAPLLLLDDIMSHLDKYYRKVLIEEMLSIRCQAWITDVDQNNFGNYIDYFKTIEL |
2O5V Chain:A ((2-340)) | --GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAP-RIEQLIQA-GETEAYVRADLQQGGSLSIQEVGLGRGRRQLKVDGVRA-RTGDLP-RGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG---EEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPE----TYAADLRGRRAEELARGSTVTGPHRDDLLLTLGDFPA-SDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-PQAIVTGTELAPG---AALTLRAQA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O5V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192056 for 2755 contacts (-69.7/contact) +
2D Compatibility (PS) -35771 + (NN) -8899 + (LL) 984
1D Compatibility (HY) 0 + (ID) 3200
Total energy: -238942.0 ( -86.73 by residue)
QMean score : 0.474
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