Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISG----SKNYDIDSVSVIGENLVIATINGVNSRNEAEFLRNKKLYVERNKLLKLNDENEFYQSDLVNMEIRLEN----DELYGYIKSIYNFGSGDILEISVIS---TKKNIMLPFTKEIFPYVNIKERYITLNMPEFIG
2QGG Chain:A ((7-181))
VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRW-KPHGKGLVVSLKGVSDRTGAESLVASNIWIAKSQLPKA-DVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVNWGVD--
General information:
TITO was launched using:
RESULT:
Template:
2QGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81221 for 1219 contacts (-66.6/contact) +
2D Compatibility (PS) -17936 + (NN) -4715 + (LL) -76
1D Compatibility (HY) -8800 + (ID) 1700
Total energy: -114448.0 ( -93.89 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2QGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QGG-query.scw
PDB file :
Tito_Scwrl_2QGG.pdb
: