Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNEL---QISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKEKDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFLEDFRSRHIKMRMKSH---EGSLIDVSG---N-------LLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
3LV0 Chain:A ((8-244))
----SAVMNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCR-----VSARRRLEDCVIATGMPHLPGHGTYLIELRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNI
General information:
TITO was launched using:
RESULT:
Template:
3LV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128453 for 1836 contacts (-70.0/contact) +
2D Compatibility (PS) -23357 + (NN) -5787 + (LL) 976
1D Compatibility (HY) -12800 + (ID) 3150
Total energy: -172571.0 ( -93.99 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3LV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV0-query.scw
PDB file :
Tito_Scwrl_3LV0.pdb
: