Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRKIRNLKGAYKIREFLEEKLKNIGDNIAASSVDDEDVGATTSSKKKKPATG----KPTEQVILQID---DKLELGSKPDLRDSPRLS
1T2A Chain:A ((280-348))
-----------HSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVR
General information:
TITO was launched using:
RESULT:
Template:
1T2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 18890 for 277 contacts (68.2/contact) +
2D Compatibility (PS) -6477 + (NN) -3940 + (LL) 1012
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: 6485.0 ( 23.41 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_1T2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T2A-query.scw
PDB file :
Tito_Scwrl_1T2A.pdb
: