Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
2VKJ Chain:A ((1-106))
-----------GSHMNLAVKLTRMEKTLKAYELYIF---SDYENFENYVKKEGL------KIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLS---DNEEIKKIASFYLEECRKKLAGD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9440 for 684 contacts (-13.8/contact) +
2D Compatibility (PS) -11251 + (NN) -5164 + (LL) 6052
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -24603.0 ( -35.97 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_2VKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VKJ-query.scw
PDB file :
Tito_Scwrl_2VKJ.pdb
: