Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVDNKYYTLSDCCGKNGFIVMFICNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSKQEVAKEYGAVCTPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
3U5R Chain:E ((26-208))
--KTQSNSITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG-QGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKD--VTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG--
General information:
TITO was launched using:
RESULT:
Template:
3U5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119170 for 1505 contacts (-79.2/contact) +
2D Compatibility (PS) -19860 + (NN) -8570 + (LL) 400
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -159600.0 ( -106.05 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3U5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U5R-query.scw
PDB file :
Tito_Scwrl_3U5R.pdb
: