Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVSCTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
2K1S Chain:A ((17-141))
---------------TGVS-VTRSGDNIILNM--------PNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQG-VDASRIRTQGLGPANPI------ASNSTAEGK-AQNRRVEITLSPLLE
General information:
TITO was launched using:
RESULT:
Template:
2K1S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12719 for 921 contacts (-13.8/contact) +
2D Compatibility (PS) -13885 + (NN) -9068 + (LL) 3220
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -40752.0 ( -44.25 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_2K1S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K1S-query.scw
PDB file :
Tito_Scwrl_2K1S.pdb
: