Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQ-VTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYS-----EPLYVVRINTKNNEIVVGPVNA---LMQRKILVKELNWLE-QPKKG-MEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 2DER Chain:B ((19-372)) | -------------------KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE-----YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT------TGICFIGERKFREFLGRYLPA--QPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQT-DIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201931 for 2721 contacts (-74.2/contact) +
2D Compatibility (PS) -36087 + (NN) -7278 + (LL) 1636
1D Compatibility (HY) -25600 + (ID) 6650
Total energy: -275910.0 ( -101.40 by residue)
QMean score : 0.431
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