Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDNIISFAHNIS---NDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQ--FCSHVPEVYGGVLETECSFLLKDFFEKLRDSTNYY
1WWR Chain:C ((27-169))
LKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLE-EASELLSEFFKKLRNNII--
General information:
TITO was launched using:
RESULT:
Template:
1WWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111222 for 1170 contacts (-95.1/contact) +
2D Compatibility (PS) -15396 + (NN) -10479 + (LL) 24
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -152123.0 ( -130.02 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1WWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWR-query.scw
PDB file :
Tito_Scwrl_1WWR.pdb
: