Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVTPSKVKKFLEKPDILSGVLIHGNDNSKVDFFTQEIVASL-----SEYSVQMMDFAMVNKSPGLLFSELANISMFTSKKLIKLINVTG----NISKELKNVLDYNAGGHYVIMIATDLSY---NSTIKSYIESSKTFGVIACYKNSGSNLYDIISSYLKRNDIKYTNEIIYHLQSYFNYSNLPIHSELEKLVLYLGERKDLKPADIELCLSTFSNDYVTPDNLCSAIANKDMANFIKISDTLILQENFSPIGLIRIISNYFLSLEKVLLSIQGGMNEQVAIDQLNPPLFFKQLQSFKSHLKIFQLSELKKILESLISLEITCKKTDL-DHRMIFQHALQMADIGTYS |
| 1JR3 Chain:D ((2-335)) | IRLYPEQLRAQLNE-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-T--DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPD-GKLTLPRVEQAVNDAAH--FTPFHWVDALLMGKSKRALHILQQL-RLEGSEPVILLRTLQRELLLLVNLKRQSA-HTPLRALFDKHR--VWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JR3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207244 for 2324 contacts (-89.2/contact) +
2D Compatibility (PS) -34130 + (NN) -11319 + (LL) -44
1D Compatibility (HY) -9200 + (ID) 2450
Total energy: -264387.0 ( -113.76 by residue)
QMean score : 0.418
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