Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVRLIPDNLNIKFSKYRKLTALISIILVIFSLFIVVLRGVNLGIDFTGGILMEIKSSSED---HAVLNILKENGF-----TIQSSKAGNNLVMYFREEGNEGKIKKIKSVLEEKLGSSISYRKIDYIGPRISSTQILEGILSMFIAIVGIFFYVWFRFNWQCGFGGTIALIHDVILTVGFVSLTGIKFNISSVAALLTVIGYSINNSVVIYDRIREYQKSGKNRQMSDIVDASINVTLFRTVLTSGTTLLATIPLTLICTDTVRDFSLIIFFGILIGTCSAIFISAPILTCKVLISRIAV
3AQP Chain:A ((440-726))---------PRFNFMGPARYVTAATLLLAALAAGVVFAKGFNYSIDFTGGTAYTLRA-EPNVEVETLRRFLEEKGFPGKEAVITQV--YREFLVKLPPL-SDERRLELERLFASELKA--TVLASETVGPAIGEELRRNAVMAVLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNR-----


General information:
TITO was launched using:
RESULT:

Template: 3AQP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207606 for 2141 contacts (-97.0/contact) +
2D Compatibility (PS) -27814 + (NN) -618 + (LL) 1524
1D Compatibility (HY) -25600 + (ID) 4250
Total energy: -264364.0 ( -123.48 by residue)
QMean score : 0.315

(partial model without unconserved sides chains):
PDB file : Tito_3AQP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3AQP-query.scw
PDB file : Tito_Scwrl_3AQP.pdb: